PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g01330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 311aa    MW: 34803.3 Da    PI: 9.9646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g01330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32243301259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  CA06g01330 243 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 301
                 69************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17195240IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-34230302IPR003657WRKY domain
PROSITE profilePS5081130.871237303IPR003657WRKY domain
SuperFamilySSF1182909.42E-28240302IPR003657WRKY domain
SMARTSM007745.9E-40242302IPR003657WRKY domain
PfamPF031066.5E-28244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEIEEANNA AVENCHRVMS LLSSGTHDRN QYMNLVRETG EAVNKFKKVV TLLNSTLGHA  60
RVRKSNKFKT PLPHNILVEN PNCKIDDQAK ALRSRPIDEN RVLEMGGTNV KCNLTLGSPS  120
LELSSNSRNP LNFGQQTHLP SYNYLQQQQQ QQRLFLLQQQ SFISSLSVDG SVANGSNFHL  180
VGASQSLDQS SFQHKRRCSE RGDEGSVKCG SSGKCHCSKK RKHRVKRSIK VPAVSNKLAD  240
IPSDEYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV ERCLEDPSML IVTYEGEHNH  300
PRMASQSANT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21235300771WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-156HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576165.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotQ9SR071e-92WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLK4C3P10.0K4C3P1_SOLLC; Uncharacterized protein
STRINGSolyc06g008610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.17e-81WRKY DNA-binding protein 39